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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">SATNT</journal-id>
<journal-title-group>
<journal-title>Suid-Afrikaanse Tydskrif vir Natuurwetenskap en Tegnologie</journal-title>
</journal-title-group>
<issn pub-type="ppub">0254-3486</issn>
<issn pub-type="epub">2222-4173</issn>
<publisher>
<publisher-name>AOSIS</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">SATNT-36-1495</article-id>
<article-id pub-id-type="doi">10.4102/satnt.v36i1.1495</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Oorspronkilike Navorsing</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Ho&#x00EB; voorkomskoers van bakteri&#x00EB;le vaginose en Chlamydia in &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-7801-1063</contrib-id>
<name>
<surname>Lennard</surname>
<given-names>Katie S.</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0002">2</xref>
<xref ref-type="aff" rid="AF0003">3</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-8373-9593</contrib-id>
<name>
<surname>Dabee</surname>
<given-names>Smritee</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-4819-9501</contrib-id>
<name>
<surname>Barnabas</surname>
<given-names>Shaun L.</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Havyarimana</surname>
<given-names>Enock</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0003-0316-7087</contrib-id>
<name>
<surname>Jaumdally</surname>
<given-names>Shameem Z.</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Botha</surname>
<given-names>Gerrit</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0002">2</xref>
<xref ref-type="aff" rid="AF0003">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mkhize</surname>
<given-names>Nonhlanhla N.</given-names>
</name>
<xref ref-type="aff" rid="AF0005">5</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-0755-4386</contrib-id>
<name>
<surname>Bekker</surname>
<given-names>Linda-Gail</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0006">6</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-9510-5774</contrib-id>
<name>
<surname>Gray</surname>
<given-names>Glenda</given-names>
</name>
<xref ref-type="aff" rid="AF0007">7</xref>
<xref ref-type="aff" rid="AF0008">8</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0003-4905-0941</contrib-id>
<name>
<surname>Mulder</surname>
<given-names>Nicola</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0002">2</xref>
<xref ref-type="aff" rid="AF0003">3</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-1471-4245</contrib-id>
<name>
<surname>Passmore</surname>
<given-names>Jo-Ann</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
<xref ref-type="aff" rid="AF0005">5</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">http://orcid.org/0000-0002-0745-6073</contrib-id>
<name>
<surname>Jaspan</surname>
<given-names>Heather B.</given-names>
</name>
<xref ref-type="aff" rid="AF0001">1</xref>
<xref ref-type="aff" rid="AF0004">4</xref>
<xref ref-type="aff" rid="AF0009">9</xref>
</contrib>
<aff id="AF0001"><label>1</label>Institute of Infectious Disease and Molecular Medicine, University of Cape Town, South Africa</aff>
<aff id="AF0002"><label>2</label>Computational Biology Division, University of Cape Town, South Africa</aff>
<aff id="AF0003"><label>3</label>Department of Integrative Biomedical Sciences, University of Cape Town, South Africa</aff>
<aff id="AF0004"><label>4</label>Department of Pathology, University of Cape Town, South Africa</aff>
<aff id="AF0005"><label>5</label>National Health Laboratory Service, South Africa</aff>
<aff id="AF0006"><label>6</label>Desmond Tutu HIV Centre, University of Cape Town, South Africa</aff>
<aff id="AF0007"><label>7</label>Perinatal HIV Research Unit, University of the Witwatersrand, South Africa</aff>
<aff id="AF0008"><label>8</label>South African Medical Research Council, South Africa</aff>
<aff id="AF0009"><label>9</label>Seattle Children&#x2019;s Research Institute, Department of Pediatrics and Global Health, University of Washington, United States</aff>
</contrib-group>
<author-notes>
<corresp id="cor1"><bold>Corresponding author:</bold> Katie Lennard, <email xlink:href="katieviljoen@gmail.com">katieviljoen@gmail.com</email></corresp>
</author-notes>
<pub-date pub-type="epub"><day>12</day><month>12</month><year>2017</year></pub-date>
<pub-date pub-type="collection"><year>2017</year></pub-date>
<volume>36</volume>
<issue>1</issue>
<elocation-id>1495</elocation-id>
<history>
<date date-type="received"><day>09</day><month>10</month><year>2017</year></date>
<date date-type="accepted"><day>01</day><month>11</month><year>2017</year></date>
</history>
<permissions>
<copyright-statement>&#x00A9; 2017. The Authors</copyright-statement>
<copyright-year>2017</copyright-year>
<license license-type="open-access" xlink:href="https://creativecommons.org/licenses/by/4.0/">
<license-p>Licensee: AOSIS. This work is licensed under the Creative Commons Attribution License.</license-p>
</license>
</permissions>
<abstract>
<p>Jong Suid-Afrikaanse vroue uit hulpbron-arm gemeenskappe staar verskeie uitdagings in die gesig in terme van hulle seksuele en reproduktiewe gesondheid. Hier beskryf ons die voorkoms van vaginale mikrobiota en seksueel oordraagbare infeksies (SOI&#x2019;s) onder 102; 16&#x2013;22-jarige MIV-negatiewe Suid-Afrikaanse vroue uit &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad. Vaginale mikrobiota is met behulp van 16S rRNA amplikon volgorde-bepaling geprofileer; bakteriese vaginose (BV) status is met behulp van &#x2019;n Nugent-telling vasgestel; en SOI&#x2019;s is deur middel van &#x2019;n multipleks polimerase kettingreaksie bepaal. SOI&#x2019;s was algemeen, met 55&#x0025; van die vroue wat ten minste een SOI gehad het; 41&#x0025; wat met ho&#x00EB;-risiko menslike papillomavirus (MPV) besmet was, en &#x2019;n verdere 28&#x0025; wat met laerisiko-MPV besmet was; 44&#x0025; van die vroue was met Chlamydia besmet waarvan 16&#x0025; een of meer addisionele SOI gehad het. BV persentasies was ook baie hoog met 55&#x0025; van die vroue wat as BV-positief (Nugent-telling &#x2265;7) geklassifiseer is, 7&#x0025; as BV-intermedi&#x00EA;r (Nugent-telling 3&#x2013;6), en 38&#x0025; as BV-negatief (Nugent-telling 0&#x2013;2). Streptococcus (Streptococcus agalactiae), die grootste oorsaak van neonatale sepsis, was teenwoordig in 25&#x0025; van die BV-positiewe vroue en 28&#x0025; van die BV-negatiewe vroue, en was dus meer onder BV-negatiewe vroue. Chlamydia-infeksie sowel as BV kan reproduktiewe gesondheid nadelig be&#x00EF;nvloed en verhoog hierdie vroue se risiko vir die verkryging van MIV. Die voorkoms van veral Prevotella amnii kan die MIV-risiko verhoog as gevolg van sy inflammatoriese kapasiteit. Laboratorium-gebaseerde toetsing vir SOI&#x2019;s (veral Chlamydia en Gonorrhoeae) blyk in hierdie gemeenskap geregverdig te wees, tesame met verdere monitering en/of behandeling van BV.</p>
<sec id="st1">
<title>Navorsing korrelasie</title>
<p>Hierdie artikel is die vertaalde weergawe en is beskikbaar gestel om &#x2018;n bre&#x00EB;r lesersgroep te bereik. Die oorspronklike Engelse artikel is beskikbaar hier: <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.4102/satnt.v36i1.1484">https://doi.org/10.4102/satnt.v36i1.1484</ext-link></p>
</sec>
</abstract>
<trans-abstract xml:lang="en">
<p><bold>High rates of bacterial vaginosis and Chlamydia in a low-income, high-population-density community in Cape Town.</bold> Young South African women, from resource-poor communities, face several sexual and reproductive health challenges. Here we describe the vaginal microbiota and sexually transmitted infection (STI) prevalence of 102; 16&#x2013;22-year-old, HIV-negative South African women from a low-income, high-population-density community in Cape Town (CPT). Vaginal microbiota were profiled using 16S rRNA amplicon sequencing; bacterial vaginosis (BV) status was established using Nugent scoring; and STIs were determined by multiplex polymerase chain reaction. STIs were common, with 55&#x0025; of women having at least one STI; 41&#x0025; were infected with high-risk human papilloma virus (HPV) and a further 28&#x0025; with low-risk HPV; 44&#x0025; were infected with Chlamydia, 16&#x0025; of whom had at least one additional STI. Similarly, BV rates were very high, with 55&#x0025; of women classified as BV-positive (Nugent score &#x2265;7); 7&#x0025; as BV-intermediate (Nugent score 3&#x2013;6) and 38&#x0025; as BV-negative (Nugent 0&#x2013;2). Group B Streptococcus (Streptococcus agalactiae), the leading cause of neonatal sepsis, was present in 25&#x0025; of BV-positive women and 28&#x0025; of BV-negative women, and was significantly more abundant among BV-negative women. Both Chlamydia infection and BV may adversely affect reproductive health and place these women at additional risk for HIV acquisition. The high abundance of Prevotella amnii, in particular, may increase HIV risk, given its inflammatory capacity. Laboratory-based testing for STIs (Chlamydia and Gonorrhoeae in particular) appears to be warranted in this community, together with further monitoring and/or treatment of BV.</p>
<sec id="st2">
<title>Research correlation</title>
<p>This article is the translated version, made available to provide access to a larger readership, of which the original English article is available here: <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.4102/satnt.v36i1.1484">https://doi.org/10.4102/satnt.v36i1.1484</ext-link></p>
</sec>
</trans-abstract>
</article-meta>
</front>
<body>
<sec id="s0001">
<title>Inleiding</title>
<p>Jong Suid-Afrikaanse vroue uit hulpbron-arm gemeenskappe staar verskeie uitdagings in die gesig in terme van hulle seksuele en reproduktiewe gesondheid. Die voorkomssyfer van MIV in tieners en jong vroue in Sub-Sahara Afrika is disproporsioneel hoog relatief tot hulle manlike eweknie&#x00EB;. Daar is verskeie faktore wat hiertoe kan bydra, insluitend die gebrek aan seksuele en reproduktiewe gesondheidsopvoeding, asook onvoldoende openbare gesondheidsdienste. Een belangrike addisionele risikofaktor vir MIV-besmetting wat klaarblyklik nie verband hou met gedrag nie, is genitale inflammasie (Masson et al. <xref ref-type="bibr" rid="CIT0031">2015</xref>). Verskeie faktore is as oorsake van genitale inflammasie voorgestel, insluitend bakteri&#x00EB;le vaginose (BV) &#x2013; gekenmerk deur verhoogde vaginale mikrobiese diversiteit en &#x2019;n afname in die proporsie Lactobacilli &#x2013; en seksueel oordraagbare infeksies (SOI&#x2019;s). Hierdie faktore blyk interafhanklik te wees, aangesien BV geassosieer word met &#x2019;n verhoogde risiko van SOI-besmetting (Balkus et al. <xref ref-type="bibr" rid="CIT0004">2014</xref>; Gallo et al. <xref ref-type="bibr" rid="CIT0018">2012</xref>; Wiesenfeld et al. <xref ref-type="bibr" rid="CIT0046">2003</xref>), insluitend MIV (Atashili et al. <xref ref-type="bibr" rid="CIT0003">2008</xref>; Myer et al. <xref ref-type="bibr" rid="CIT0036">2005</xref>; Taha et al. <xref ref-type="bibr" rid="CIT0045">1998</xref>), en ook omgekeerd (Gallo et al. <xref ref-type="bibr" rid="CIT0018">2012</xref>). BV is meer algemeen in vroue van Afrika-afkoms in vergelyking met Europese vroue (Buv&#x00E9; et al. <xref ref-type="bibr" rid="CIT0007">2014</xref>; Ravel et al. <xref ref-type="bibr" rid="CIT0041">2010</xref>; Srinivasan et al. <xref ref-type="bibr" rid="CIT0043">2012</xref>), met &#x2019;n uiters ho&#x00EB; BV-voorkomssyfer in Suid-Afrika (34&#x0025;&#x2013;58&#x0025;) in vergelyking met ander lande (Kenyon, Colebunders &#x0026; Crucitti <xref ref-type="bibr" rid="CIT0025">2013</xref>).</p>
<p>Menslike papillomavirus(MPV)-infeksies hou verdere gesondheidsgevare in, aangesien ho&#x00EB;-risiko MPV-tipes oorsaaklik verbind is aan byna alle gevalle van servikale kanker. Servikale kanker het &#x2019;n voorkomskoers van ongeveer 30/100 000 in Sub-Sahara Afrika &#x2013; vyf keer ho&#x00EB;r as in ontwikkelde lande, soos Australi&#x00EB;, waar MPV-inenting sedert 2007 beskikbaar is (Ferlay et al. <xref ref-type="bibr" rid="CIT0015">2015</xref>). In 2000 het die Suid-Afrikaanse Nasionale Departement van Gesondheid &#x2019;n nasionale servikale kanker siftingsbeleid ingestel wat vroue ouer as 30 toegang gee tot drie gratis Papanicolaou(Pap)-smere &#x2013; een elke 10 jaar (Harries et al. <xref ref-type="bibr" rid="CIT0023">2009</xref>). In 2014 het die Suid-Afrikaanse Nasionale Departement van Gesondheid MPV-profilaktiese inenting in Suid-Afrikaanse openbare skole ge&#x00EF;mplementeer vir alle graad 4-meisies nege jaar en ouer; dit het byna &#x2019;n halfmiljoen meisies geteiken.</p>
<p>Reproduktiewe en neonatale gesondheid verteenwoordig nog &#x2019;n groot kommer onder hierdie jong vroue, met 19&#x0025; Suid-Afrikaanse vroue wat &#x2019;n tienerswangerskap (10&#x2013;19 jaar oud) gehad het, waarvan 16&#x0025; ongewens was (Mchunu et al. <xref ref-type="bibr" rid="CIT0032">2012</xref>). SOI&#x2019;s, soos Chlamydia, kan tot pelviese inflammatoriese siekte en onvrugbaarheid lei. Die risiko van &#x2019;n ektopiese swangerskap of &#x2019;n miskraam kan ook verhoog (Anschuetz et al. <xref ref-type="bibr" rid="CIT0002">2012</xref>; Baud et al. <xref ref-type="bibr" rid="CIT0005">2011</xref>; Gottlieb, Xu &#x0026; Brunham <xref ref-type="bibr" rid="CIT0021">2013</xref>; Haggerty et al. <xref ref-type="bibr" rid="CIT0022">2010</xref>), veral as dit onbehandeld gelaat word. Verder is <italic>S. agalactiae</italic> (ook bekend as Groep B <italic>Streptococcus</italic> of GBS) die hoofoorsaak van neonatale sepsis, en indringende <italic>S. agalactiae</italic>-siekte is algemeen onder SA-babas (Madhi et al. <xref ref-type="bibr" rid="CIT0030">2003</xref>), met oordrag vanaf die moeder se genitale kanaal wat &#x2019;n groot risikofaktor vir vroe&#x00EB; siektes (in die eerste ses lewensdae) verteenwoordig (Edmond et al. <xref ref-type="bibr" rid="CIT0013">2012</xref>).</p>
<p>Hier beskryf ons die vaginale mikrobiota en voorkomskoers van SOI&#x2019;s onder 16&#x2013;22-jarige MIV-negatiewe Suid-Afrikaanse vroue uit &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad, en beklemtoon die uitdagings wat hierdie vroue in die gesig staar in terme van hulle seksuele en reproduktiewe gesondheid.</p>
</sec>
<sec id="s0002">
<title>Materiaal and metodes</title>
<sec id="s20003">
<title>Deelnemerseleksie en monsterversameling</title>
<p>MIV-negatiewe Suid-Afrikaanse vroue tussen die ouderdomme van 16 en 22 jaar is vanuit &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad gewerf as deel van die <italic>Women&#x2019;s Initiative in Sexual Health</italic> studie (WISH). Alle deelnemers 18 jaar en ouer het ingeligte toestemming gegee, terwyl instemming en ouerlike toestemming vir deelnemers jonger as 18 jaar verkry is. Jong vroue is gewerf as hulle MIV-negatief was, oor die algemeen gesond was, nie swanger was of gemenstrueer het tydens die steekproefneming nie, en wat nie in die vorige 48 h onbeskermde seks of uitspoeling gehad het nie. Bykomende uitsluitingskriteria was die gebruik van antibiotika gedurende die voorafgaande twee weke. Vir deelnemers wat slegs progestien inspuitbare voorbehoedmiddels gebruik, is studiebesoeke geskeduleer vir twee weke n&#x00E1; die inspuiting, of andersins gedurende die luteale fase van hulle menstruele siklus (tussen dag 14 en 28) indien hulle geen hormonale voorbehoedmiddels (HV&#x2019;s) gebruik nie of indien hulle orale HV&#x2019;s gebruik. Voordat die monsters ingesamel is, is die volgende gedoen: MIV-voortoets en -risikoverminderingsberading, &#x2019;n vinnige MIV-toets (Alere Determine&#x2122; HIV-1/2 Ag/Ab Combo, Alere, Waltham, MA), &#x2019;n swangerskaptoets (<italic>U-test Pregnancy strip</italic>, Humor Diagnostica, Pretoria, Suid-Afrika), en &#x2019;n fisiese roetine-ondersoek. Genitale monsters is versamel deur &#x2019;n weggooibare menstruasiebeker (Softcup<sup>&#x00AE;</sup>) vir &#x2019;n uur oor die serviks te plaas en vaginale deppers (n&#x00E1; bekerverwydering) te neem vir SOI-toetsing, Nugent-telling en mikrobiome-analise. Vroue is longitudinaal vir &#x2019;n totaal van drie besoeke gevolg: elke twee maande as hulle <italic>Norethisterone enanthate</italic> (Net-EN), gekombineerde mondelinge voorbehoedmiddels of slegs versperring-tipe kontrasepsie gebruik, of elke drie maande as hulle Depot medroxyprogesterone acetate (DMPA) gebruik.</p>
</sec>
<sec id="s20004">
<title>Seksueel oordraagbare infeksies en bakteriese vaginose toetse</title>
<p>Vulvovaginale deppers is versamel vir SOI-toetsing deur multipleks polimerase-kettingreaksie (PKR) (<italic>Chlamydia trachomatis, Neisseria gonorrhoeae, Trichomonas vaginalis, Mycoplasma genitalium</italic>, HSV-1 en -2, <italic>Haemophilus ducreyi, Treponema pallidum</italic> en <italic>Lymphogranuloma venereum</italic>), soos voorheen beskryf (Lewis et al. <xref ref-type="bibr" rid="CIT0029">2012</xref>). Bloed is verkry vir die vinnige MIV en HSV-2 serologiese toetse. Endo-servikale deppers is ingesamel vir MPV-opsporing en genotipering deur <italic>Roche Linear Array</italic> (Mbulawa et al.) ingedien. Die volgende MPV-tipes is as ho&#x00EB;-risiko MPV beskou: 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66 en 68 (Jacobs et al. <xref ref-type="bibr" rid="CIT0024">1997</xref>). Vir ontledings wat na SOI (enige) verwys, is vroue as positief beskou indien hulle minstens een van die SOI&#x2019;s (uitsluitend MPV) gehad het wat in hierdie studie getoets is. Laterale muur/posterior forniks deppers is vir die Nugent-telling ingesamel om monsters te klassifiseer as BV-negatief (Nugent 0&#x2013;3), intermedi&#x00EA;r (Nugent 4&#x2013;6) of positief (Nugent 7&#x2013;10); en vaginale pH is met behulp van kleurvaste aanwysers gemeet (Macherey-Nagel, D&#x00FC;ren, Duitsland).</p>
</sec>
<sec id="s20005">
<title>Bakteri&#x00EB;le 16S rRNS-geen multipleks polimerase-kettingreaksie amplifikasie en DNS-volgordebepaling</title>
<p>Alle monsters van die eerste besoek is gekies vir 16S rRNS-geen amplifikasie deur PKR met daaropvolgende amplikon-volgordebepaling. Die deppers is ontdooi, behandel met &#x2019;n mengsel van &#x2018;mutanolysin&#x2019; (25kU/mL, Sigma Aldrich), lisosiem (450 kU/mL, Sigma Aldrich) en &#x2018;lysostaphin&#x2019; (4kU, Sigma Aldrich), en dan meganies met &#x2019;n <italic>BeadBeater</italic> ontwrig. Deoksiribonukle&#x00EF;ensuur (DNS) is onttrek met behulp van die <italic>MoBio PowerSoil</italic> DNS-ekstraksiestel (MoBio, Carlsbad, CA). Die V4-streek van die 16S rRNS-geen is versterk deur gebruik te maak van gewysigde universele inleiers (Pearce, Hilt &#x0026; Rosenfeld <xref ref-type="bibr" rid="CIT0039">2014</xref>): 515F (TCG TCG GCA GCG TCA GAT GTG TAT AAG AGA CAG NNN NNG TGC CAG CMG CCG CGG TAA) en 806R (GTC TCG TGG GCT CGG AGA TGT GTA TAA GAG ACA GNN NNN GGA CTA CHV GGG TWT CTA AT), en die kwaliteit is met <italic>Bioanalyzer</italic> (Agilent, Santa Clara, CA, Verenigde State) nagegaan. Saamgevoegde duplikaat monsters is met <italic>AMPure XP</italic> krale (Beckman Coulter, Brea, CA, Verenigde State) gesuiwer, en gekwantifiseer met behulp van die <italic>Picogreen dsDNA</italic> toets (Invitrogen, Carlsbad, CA, Verenigde State). Amplikone is in ekwimol&#x00EA;re hoeveelhede gekombineer, en gesuiwerde DNS-biblioteke bestaande uit ~100 saamgevoegde monsters se gepaarde-ent volgordebepaling is uitgevoer op &#x2019;n <italic>Illumina MiSeq</italic>-platform (300bp met V3-chemie gepaarde-ent).</p>
<p>N&#x00E1; demultipleksering is die rou DNS basisvolgordes soos volg voorverwerk: basisvolgordes vir beide rigtings (vorentoe en agtertoe) is met behulp van <italic>usearch7</italic> (Edgar <xref ref-type="bibr" rid="CIT0011">2010</xref>) saamgevoeg, met &#x2019;n maksimum van drie onpare toegelaat; saamgevoegde basisvolgordes is gefilter volgens kwaliteit met behulp van <italic>usearch7</italic> (basisvolgordes met E-tellings groter as 0.1 is weggegooi); inleier-sekwensies is met behulp van &#x2019;n verpersoonlikte <italic>Python</italic> teks verwyder; saamgevoegde, gefiltreerde basisvolgordes is by 250bp afgestomp. Hierna is sekwensies gededupliseer terwyl die vlak van replikasie vir elke ry met behulp van <italic>usearch7</italic> aangeteken is. Die gededupliseerde sekwensies is volgens oorvloed (hoogste tot laagste) gesorteer en <italic>de novo</italic> in operasionele taksonomiese eenhede (OTE&#x2019;s) gegroepeer teen 97&#x0025; similariteit met behulp van <italic>usearch7</italic>. Chimeriese sekwensies is met behulp van UCHIME (Edgar et al. <xref ref-type="bibr" rid="CIT0012">2011</xref>) opgespoor (in die GOLD-databasis), en verwyder. Individuele frekwensies is aan die spesifieke identifiseerders toegewys, met &#x2019;n 97&#x0025; opeenvolgingidentiteit drumpel. Taksonomiese aanwysing is uitgevoer in QIIME 1.8.0 (Caporaso et al. <xref ref-type="bibr" rid="CIT0008">2010</xref>) met behulp van die RDP-klassifiseerder (by die standaard vertrouenspeil van 0.5) teenoor die Greengenes 13.8 verwysingstaksonomie vir 97&#x0025; opeenvolgingidentiteit. Om die resolusie van spesievlakke te verhoog, het ons ons verteenwoordigende <italic>de novo</italic> OTE sekwensies in die verpersoonlikte taksonomiese databasis van Fettweis et al. (<xref ref-type="bibr" rid="CIT0017">2012</xref>) opgesoek, en het BLAST soektogte teen die NCBI nukleotied-databasis uitgevoer, soos voorheen beskryf.</p>
<p>Monsters met &#x2265;5000 basisvolgordes is vir verdere analise geselekteer. Die OTE-tabel is gestandaardiseer om verskille in totale hoeveelheid basisvolgordes tussen verskillende monsters in ag te neem, en verder gefiltreer sodat elke OTE ten minste 10 tellings in minstens 2&#x0025; van die monsters moes h&#x00EA; of &#x2019;n relatiewe oorvloed van minstens 0.001&#x0025; moes h&#x00EA;.</p>
</sec>
<sec id="s20006">
<title>Statistiese analise</title>
<p>Alle stroomaf statistiese analise is in R uitgevoer, met behulp van die volgende pakkette: <italic>phyloseq</italic> (McMurdie &#x0026; Holmes <xref ref-type="bibr" rid="CIT0033">2013</xref>) vir beta-diversiteitsontledings, <italic>metagenomeSeq</italic> (Paulson et al. <xref ref-type="bibr" rid="CIT0038">2013</xref>) vir differensiaal-oorvloedtoetsing, <italic>vegan</italic> (Oksanen et al. <xref ref-type="bibr" rid="CIT0037">2016</xref>) vir NMDS en RDA analise (Gaujoux <xref ref-type="bibr" rid="CIT0019">2014</xref>) vir geannoteerde hittekaarte. Verskille in mikrobiese samestelling tussen groepe van belang is geassesseer met behulp van <italic>metagenomeSeq</italic> se &#x2018;MRfulltable&#x2019; funksie met &#x2019;n verpersoonlikte filter om betekenis te bepaal: saamgevoegde taksa is aansienlik anders as hulle &#x2019;n veelvoud verandering (beta-ko&#x00EB;ffisi&#x00EB;nt) van &#x2265;1.25 getoon het, &#x2019;n aangepaste <italic>p</italic>-waarde van &#x2264;0.05 en as minstens een van die twee groepe wat vergelyk is &#x2265;20&#x0025; van die monsters met die gegewe OTE/takson gehad het, &#x00F3;f die resultaat van die Fisher eksakte toets was beduidend (n&#x00E1; meervoudige toetsregstellings [MT]). OTE&#x2019;s is eers op die laagste beskikbare taksonomiese vlak saamgevoeg (m.a.w. tellings is opgesom vir OTE&#x2019;s met Lactobacillus as die laagste beskikbare taksonomiese annotasie, terwyl OTE&#x2019;s met addisionele spesievlak annotasie, bv. <italic>L. iners</italic>, eerder op spesievlak opgesom is).</p>
</sec>
</sec>
<sec id="s0007">
<title>Resultate</title>
<p>Altesaam 149 MIV-negatiewe 16&#x2013;22-jarige vroue is uit &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad gewerf. Van die 115 vroue vir wie 16S rRNS-geen amplikon-volgordebepaling uitgevoer is (a.g.v. die beskikbaarheid van deppers en voldoende DNS), het 102 die volgordebepaling se kwaliteitsbeheer geslaag (&#x003E;5000 basisvolgorders/monster). Hier beskryf ons hierdie 102 vroue se mikrobiotiese profiele, SOI-voorkomssyfer en ander faktore wat van toepassing is op seksuele en reproduktiewe gesondheid (<xref ref-type="table" rid="T0001">Tabel 1</xref>).</p>
<table-wrap id="T0001">
<label>TABEL 1</label>
<caption><p>Deelnemer-opsomming (<italic>N</italic> = 102).</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left" rowspan="2">Kenmerk</th>
<th valign="top" align="center" colspan="2">Kaapstad</th>
</tr>
<tr>
<th valign="top" align="center"><italic>N</italic></th>
<th valign="top" align="center">&#x0025;</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left"><bold>Mediaan ouderdom</bold></td>
<td align="center"><bold>18</bold></td>
<td align="center"><bold>-</bold></td>
</tr>
<tr>
<td align="left" colspan="3"><bold>BV-voorkomssyfer</bold></td>
</tr>
<tr>
<td align="left"><italic>BV-positief</italic></td>
<td align="center">56</td>
<td align="center">55</td>
</tr>
<tr>
<td align="left"><italic>BV-intermedi&#x00EA;r</italic></td>
<td align="center">7</td>
<td align="center">7</td>
</tr>
<tr>
<td align="left"><italic>BV-negatief</italic></td>
<td align="center">39</td>
<td align="center">38</td>
</tr>
<tr>
<td align="left"><bold>Nugent-telling (gemiddeld)</bold></td>
<td align="center"><bold>5.5</bold></td>
<td align="center"><bold>-</bold></td>
</tr>
<tr>
<td align="left">SOI (enige)<xref ref-type="table-fn" rid="TFN0001">&#x2020;</xref></td>
<td align="center">56</td>
<td align="center">55</td>
</tr>
<tr>
<td align="left"><italic>Chlamydia trachomatis</italic></td>
<td align="center">45</td>
<td align="center">44</td>
</tr>
<tr>
<td align="left"><italic>Neisseria gonorrhoeae</italic></td>
<td align="center">14</td>
<td align="center">14</td>
</tr>
<tr>
<td align="left"><italic>Trichomonas vaginalis</italic></td>
<td align="center">6</td>
<td align="center">6</td>
</tr>
<tr>
<td align="left"><italic>Mycoplasma genitalium</italic></td>
<td align="center">4</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">HSV-2</td>
<td align="center">6</td>
<td align="center">6</td>
</tr>
<tr>
<td align="left" colspan="3"><bold>MPV-risiko</bold></td>
</tr>
<tr>
<td align="left"><italic>Hoog</italic></td>
<td align="center">42</td>
<td align="center">41</td>
</tr>
<tr>
<td align="left"><italic>Laag</italic></td>
<td align="center">29</td>
<td align="center">28</td>
</tr>
<tr>
<td align="left"><italic>Negatief</italic></td>
<td align="center">31</td>
<td align="center">31</td>
</tr>
<tr>
<td align="left" colspan="3"><bold>Hormonale voorbehoedmiddel</bold></td>
</tr>
<tr>
<td align="left"><italic>DMPA</italic></td>
<td align="center">19</td>
<td align="center">19</td>
</tr>
<tr>
<td align="left"><italic>Implanon</italic></td>
<td align="center">8</td>
<td align="center">8</td>
</tr>
<tr>
<td align="left"><italic>Net-En</italic></td>
<td align="center">70</td>
<td align="center">68</td>
</tr>
<tr>
<td align="left"><italic>OKP</italic></td>
<td align="center">4</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left"><italic>NuvaRing</italic></td>
<td align="center">1</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left" colspan="3"><bold>Etnisiteit</bold><xref ref-type="table-fn" rid="TFN0002">&#x2021;</xref></td>
</tr>
<tr>
<td align="left"><italic>Xhosa</italic></td>
<td align="center">94</td>
<td align="center">99</td>
</tr>
<tr>
<td align="left"><italic>Zulu</italic></td>
<td align="center">1</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left"><bold>LMI (gemiddeld)</bold></td>
<td align="center"><bold>25.4</bold></td>
<td align="center"><bold>-</bold></td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="TFN0001"><label>&#x2020;</label><p>, Ander SOI&#x2019;s wat getoets is (HSV-1, <italic>H. ducreyi, T. pallidum</italic> en <italic>L. venereum</italic>) is nie in enige van die vroue bespeur nie; MPV is nie in die klassifikasie van SOI (enige) ingesluit nie;</p></fn>
<fn id="TFN0002"><label>&#x2021;</label><p>, Etniese inligting was nie beskikbaar vir sewe van die vroue nie.</p></fn>
<fn><p>SOI, seksueel oordraagbare infeksie; MPV, menslike papilloma virus; LMI, liggaamsmassa-indeks.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Die mediaan ouderdom was 18 jaar en vroue was byna uitsluitlik van isiXhosa-herkoms (99&#x0025;). Die SOI-voorkomssyfer was uiters hoog met 55&#x0025; van die vroue wat met minstens een SOI gediagnoseer is deur middel van PKR. Die meerderheid van die infeksies het bestaan uit <italic>C. trachomatis</italic> (44&#x0025;), gevolg deur <italic>N. gonorrhoeae</italic> (14&#x0025;), <italic>T. vaginalis</italic> (6&#x0025;), HSV-2 (6&#x0025;) en <italic>M. genitalium</italic> (4&#x0025;). Ander SOI&#x2019;s waarvoor getoets is (HSV-1, <italic>H. ducreyi, T. pallidum</italic> en <italic>L. venereum</italic>) is nie in enige van hierdie vroue aangetref nie. SOI mede-infeksies was veelvuldig: 17&#x0025; van die vroue was met twee of meer SOI&#x2019;s besmet (<xref ref-type="table" rid="T0002">Tabel 2</xref>). BV-voorkomssyfers was ook baie hoog, met 55&#x0025; van die vroue wat as BV-positief (Nugent-telling &#x2265;7) geklassifiseer is, 7&#x0025; as BV-intermedi&#x00EA;r (Nugent-telling 3&#x2013;6), en 38&#x0025; as BV-negatief (Nugent-telling 0&#x2013;2). BV-positiewe vroue was meer geneig om Chlamydia te h&#x00EA; (52&#x0025; van BV-positiewe teenoor 38&#x0025; van BV-negatiewe vroue was met Chlamydia besmet), maar hierdie verhouding was nie betekenisvol nie, en daar was ook geen beduidende assosiasie met die voorkoms van een of meer SOI&#x2019;s of BV nie. Al 102 vroue was op HV&#x2019;s, met die meerderheid wat die slegs-progestien inspuitbare Net-En (68&#x0025;) of DMPA (19&#x0025;) gebruik het.</p>
<table-wrap id="T0002">
<label>TABEL 2</label>
<caption><p>Frekwensieverdeling van seksueel oordraagbare infeksies (<italic>N</italic> = 102), waar 1 = positief en 0 = negatief, bv. 8&#x0025; van vroue is met <italic>Chlamydia trachomatis</italic> sowel as <italic>Neisseria gonorrhoeae</italic> gediagnoseer.</p></caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th valign="top" align="left"><italic>Chlamydia trachomatis</italic></th>
<th valign="top" align="center"><italic>Neisseria gonorrhoeae</italic></th>
<th valign="top" align="center">Trichomonas vaginalis</th>
<th valign="top" align="center"><italic>Mycoplasma genitalium</italic></th>
<th valign="top" align="center">HSV-2</th>
<th valign="top" align="center">Frekwensie (N)</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">46</td>
</tr>
<tr>
<td align="left">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">0</td>
<td align="center">1</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">29</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">8</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">1</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">1</td>
<td align="center">0</td>
<td align="center">1</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s20008">
<title>Vaginale mikrobiota profilering</title>
<p>Ongekontroleerde groepering van mikrobiota profiele toon &#x2019;n sterk ooreenstemming tussen verhoogde mikrobiese diversiteit deur die 16S rRNA-geen amplikon-volgordebepaling en BV-status (<xref ref-type="fig" rid="F0001">Figuur 1</xref>). Onder die BV-negatiewe vroue was <italic>L. iners</italic> of <italic>L. crispatus</italic> verreweg die volopste taksa, met aansienlik minder diverse vaginale mikrobiota in vergelyking met BV-positiewe (1.6e-7) of BV-intermedi&#x00EA;re (<italic>p</italic> = 0.03) vroue. BVAB1 was die volopste spesie in 32&#x0025; van die BV-positiewe en BV-intermedi&#x00EA;re vroue, gevolg deur <italic>G. vaginalis</italic> (17&#x0025;), Prevotella (16&#x0025;), Megasphaera, <italic>L. Iners</italic> (10&#x0025;) en <italic>L. crispatus</italic> (5&#x0025;) (sien <xref ref-type="fig" rid="F0002">Figuur 2</xref>).</p>
<fig id="F0001">
<label>FIGUUR 1</label>
<caption><p>Hittekaart van die volopste taksa (rye) ge&#x00EF;dentifiseer deur 16S rRNA-geen mikrobioomprofilering, gebruik ongekontroleerde hi&#x00EB;rargiese klassifisering met behulp van Bray-Curtis indeks in alle monsters (kolomme). Operasionele taksonomiese eenhede (OTE&#x2019;s) is saamgesmelt teen die laagste beskikbare taksonomiese annotasie nadat seldsame en minder volop OTE&#x2019;s uitgesluit is (met &#x2019;n vereiste van ten minste 20 tellings in minstens 30&#x0025; van die monsters vir &#x2019;n gegewe OTE).</p></caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="SATNT-36-1495-g001.tif"/>
</fig>
<fig id="F0002">
<label>FIGUUR 2</label>
<caption><p>&#x2019;n Kolomgrafiek-opsomming van die individuele mikrobiota profiele, met saamgestelde kolomme wat volgens die dominante taksa gegroepeer is en georden volgens die afnemende deel van die dominante takson. Die swart, wit en grys bokse aan die bokant dui onderskeidelik op bakteri&#x00EB;le vaginose (BV+), BV-negatiewe en BV-intermedi&#x00EA;re status.</p></caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="SATNT-36-1495-g002.tif"/>
</fig>
<p>Deur ons verpersoonlikte taksonomiese annotasie pyplyn te gebruik, kon ons alle Lactobacilli tot op spesievlak oplos. Die teenwoordige spesies was: <italic>L. iners, L. reuteri, L. crispatus, L. ruminis, L. coleohominis, L. jensenii</italic>, en <italic>L. delbrueckii</italic>. Prevotella is ook deur verskeie spesies verteenwoordig: 12 van die 19 Prevotella OTE&#x2019;s kon op spesievlak opgelos word, waarvan <italic>P. amnii, P. bivia, P. timonensis, P. disiens</italic> en <italic>P. pallens</italic> saam verantwoordelik was vir &#x2265;50&#x0025; van die Prevotella-tellings in 68&#x0025; van die BV-positiewe en -intermedi&#x00EA;re vroue (<xref ref-type="fig" rid="F0002">Figuur 2</xref>), terwyl Prevotella van onbekende spesies &#x2265;50&#x0025; in &#x2019;n verdere 27&#x0025; van die BV-positiewe/-intermedi&#x00EA;re vroue uitgemaak het.</p>
<p>Differensiaal-oorvloedtoetsing tussen BV-positiewe versus BV-negatiewe vroue lewer 41 beduidende taksa (<xref ref-type="fig" rid="F0003">Figuur 3</xref>). Soos verwag, was BVAB1, BVAB2, BVAB3, <italic>G. vaginalis</italic>, Megasphaera en verskeie Prevotella-spesies meer volop in BV-positiewe vroue. Lactobacilli, insluitend <italic>L. crispatus, L. reuteri, L. jensenii, L. iners</italic> en <italic>L. delbrueckii</italic>, was aansienlik meer volop in BV-negatiewe vroue.</p>
<fig id="F0003">
<label>FIGUUR 3</label>
<caption><p>&#x2019;n Hittekaart van taksa wat aansienlik differensieel volop en/of gereeld voorkom in BV- positiewe teenoor BV-negatiewe vroue (aangepaste <italic>p</italic>-waarde &#x2264; 0.05, ko&#x00EB;ffisi&#x00EB;nt &#x2265;1.25, taksa teenwoordig in &#x2265;20&#x0025; van die monsters in minstens een van die twee groepe wat vergelyk word); monsters (kolomme) is gesorteer volgens BV-klassifikasie; hittekaartskaal: log2-getransformeerde gestandaardiseerde tellings.</p></caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="SATNT-36-1495-g003.tif"/>
</fig>
<p>Die voorkoms van Groep B <italic>Streptococcus</italic> is uit 16S rRNA-geen amplikon-volgordebepaling bepaal: 25&#x0025; van BV-positiewe vroue en 28&#x0025; van BV-negatiewe vroue is deur <italic>S. agalactiae</italic> gekoloniseer wat aansienlik meer volop onder BV-negatiewe vroue was (beta ko&#x00EB;ffisi&#x00EB;nt = 1.4, aangepaste <italic>p</italic>-waarde = 0.02) (sien <xref ref-type="fig" rid="F0004">Figuur 4</xref>).</p>
<fig id="F0004">
<label>FIGUUR 4</label>
<caption><p>Groep B. <italic>Streptococcus</italic> voorkoms gestratifiseer volgens BV-status.</p></caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="SATNT-36-1495-g004.tif"/>
</fig>
</sec>
</sec>
<sec id="s0009">
<title>Bespreking</title>
<p>Hier beskryf ons die voorkomssyfers van SOI en BV en die vaginale mikrobiota profiele van 16&#x2013;22-jarige vroue uit &#x2019;n hulpbron-arm gemeenskap in K. Hierdie vroue het uiters ho&#x00EB; SOI-voorkomssyfers (55&#x0025;). Ho&#x00EB;-risiko MPV is in 41&#x0025; van die vroue aangetref, met &#x2019;n verdere 28&#x0025; met lae-risiko MPV. &#x2019;n Verbysterende 44&#x0025; van die vroue was met Chlamydia besmet, waarvan 16&#x0025; minstens een addisionele SOI gehad het. Die Chlamydia-infeksiesyfer onder hierdie vroue is aansienlik ho&#x00EB;r as wat onder jong seksueel aktiewe vroue uit ander dele van SA gerapporteer is, insluitend die landelike streke van KwaZulu-Natal (25&#x0025;) (Kleppa et al. <xref ref-type="bibr" rid="CIT0026">2015</xref>) en &#x2019;n ander gebied in Kaapstad (15&#x0025;) (Menezes et al. <xref ref-type="bibr" rid="CIT0034">2017</xref>). Die bestuur van SOI&#x2019;s bly problematies in ontwikkelende lande waar laboratorium-gebaseerde toetse dikwels nie beskikbaar is nie en waar die kwaliteit van SOI-versorging tekortskiet (in terme van beskikbaarheid van medisyne, nakoming van SOI-riglyne, kondoomvoorsiening en MIV-berading [Kohler et al. <xref ref-type="bibr" rid="CIT0027">2017</xref>]). Volgens die SA Departement van Gesondheid se riglyne (Department of Health <xref ref-type="bibr" rid="CIT0010">2015</xref>), kwalifiseer vroue vir SOI-behandeling gebaseer op &#x2019;n kombinasie van demografiese eienskappe, simptome en/of kliniese waarnemings, waar SOI-behandeling &#x2019;n kombinasie <italic>metronidazole, azithromycin</italic> en <italic>ceftriaxone</italic> behels (Peters et al. <xref ref-type="bibr" rid="CIT0040">2014</xref>). Chlamydia is gewoonlik asimptomaties, wat die meeste vroue in SA met Chlamydia-infeksies dus onbehandeld laat. Aanhoudende Chlamydia-infeksies kan egter tot onvrugbaarheid en pelviese inflammatoriese siekte lei, asook die risiko van &#x2019;n ektopiese swangerskap en miskraam verhoog (Anschuetz et al. <xref ref-type="bibr" rid="CIT0002">2012</xref>; Baud et al. <xref ref-type="bibr" rid="CIT0005">2011</xref>; Gottlieb et al. <xref ref-type="bibr" rid="CIT0021">2013</xref>; Haggerty et al. <xref ref-type="bibr" rid="CIT0022">2010</xref>). Chlamydia word ook met &#x2019;n verhoogde risiko van MIV-verkryging (Buckner et al. <xref ref-type="bibr" rid="CIT0006">2016</xref>) geassosieer wat die behoefte aan strenger SOI-sifting in hierdie gemeenskap verder beklemtoon.</p>
<p>BV-positiewe vroue was meer geneig om met Chlamydia besmet te wees, maar hierdie verhouding was nie betekenisvol nie, en daar was ook geen beduidende assosiasie met die voorkoms van een of meer SOI&#x2019;s of BV nie. Vorige verslae dui op &#x2019;n positiewe verband tussen samevallende Chlamydia/Gonorrhea en BV (Wiesenfeld et al. <xref ref-type="bibr" rid="CIT0046">2003</xref>). Hierdie assosiasie is egter nie altyd in &#x2019;n deursnee-opname duidelik nie, maar eerder longitudinaal waar insident BV geassosieer word met &#x2019;n verhoogde risiko van insident Gonorree/Chlamydia by &#x2019;n opvolgbesoek, en ook omgekeerd (Gallo et al. <xref ref-type="bibr" rid="CIT0018">2012</xref>).</p>
<p>Bakteri&#x00EB;le vaginose voorkomssyfers in SA is oor die algemeen uiters hoog (34&#x0025;&#x2013;58&#x0025;) relatief tot ander lande (Kenyon et al. <xref ref-type="bibr" rid="CIT0025">2013</xref>). Hierdie studie het dit bevestig met 55&#x0025; van die vroue wat BV-positief was. Soos in ander omgewings, het vroue met Nugent-tellings &#x003E;7 baie uiteenlopende vaginale mikrobiota. Soortgelyk aan vorige studies oor vroue van Afrika-afkoms, het hierdie BV-positiewe vroue gereeld vaginale mikrobiota gehad, oorheers deur BVAB1, Prevotella, <italic>G. vaginalis</italic> of <italic>L. iners</italic> (Fettweis et al. <xref ref-type="bibr" rid="CIT0016">2014</xref>).</p>
<p>Ons was in staat om verskeie Prevotella OTE&#x2019;s op spesievlak op te los. <italic>P. amnii</italic> sowel as <italic>P. bivia</italic> is met genitale inflammasie (Anahtar et al. <xref ref-type="bibr" rid="CIT0001">2015</xref>; Gosmann et al. <xref ref-type="bibr" rid="CIT0020">2017</xref>; Lennard et al. <xref ref-type="bibr" rid="CIT0028">2017</xref>) en BV geassosieer. In hierdie studie het <italic>P. bivia</italic>-vlakke egter nie volgens BV-status of inflammasie verskil nie. Fettweis et al. (<xref ref-type="bibr" rid="CIT0016">2014</xref>) het voorheen berig dat <italic>P. amnii</italic> meer algemeen in Afrika-Amerikaanse vroue voorkom in vergelyking met vroue van Europese afkoms wat die ho&#x00EB; voorkomssyfers van <italic>P. amnii</italic>-kolonisasie kan verduidelik wat hier gesien word. In kommersi&#x00EB;le sekswerkers in Oos-Afrika is <italic>P. timonensis</italic> egter meer algemeen as <italic>P. amnii</italic> (Schellenberg et al. <xref ref-type="bibr" rid="CIT0042">2011</xref>). Kolonisering deur <italic>P. amnii</italic> blyk dus besonder algemeen in hierdie studiepopulasie te wees waar alle vroue deur verskillende vlakke van <italic>P. amnii</italic> gekoloniseer is (ongeag hulle BV-status), in vergelyking met slegs 10&#x0025; en 50&#x0025; van BV-negatiewe en -positiewe vroue in die studie deur Srinivasan et al. (in &#x2019;n studiebevolking waar 34&#x0025; van deelnemers swart mense was [Srinivasan et al. <xref ref-type="bibr" rid="CIT0043">2012</xref>]). Dit is egter nie duidelik of hierdie verskille toegeskryf kan word aan ras, geografiese ligging of tegniese aspekte nie.</p>
<p>Groep B <italic>Streptococcus</italic> (GBS) kolonisasiesyfers wissel baie &#x2013; dit word aangetref in ~12&#x0025;&#x2013;22&#x0025; van vroue in ontwikkelde en ontwikkelende lande (Stoll &#x0026; Anne <xref ref-type="bibr" rid="CIT0044">1998</xref>), met voorkomssyfers van 0&#x0025; en 23&#x0025; onder onderskeidelik adolessente en volwasse Suid-Afrikaanse vroue (Cools et al. <xref ref-type="bibr" rid="CIT0009">2016</xref>). Ons het geen verskil in die frekwensie van GBS-kolonisasie per BV-status gevind nie. BV-negatiewe vroue gekoloniseer deur GBS het egter aansienlik ho&#x00EB;r vlakke van GBS gehad in vergelyking met BV-positiewe vroue. Daar is voorheen getoon dat GBS-oorvloed positief geassosieer word met &#x2019;n verhoogde risiko van nadelige geboorte uitkomste. Cools et al. (<xref ref-type="bibr" rid="CIT0009">2016</xref>) het bevind dat BV-negatiewe vroue meer gereeld deur GBS gekoloniseer is; Ekstr&#x00F6;m et al. (<xref ref-type="bibr" rid="CIT0014">2013</xref>) het &#x2019;n nie-beduidende toename in die frekwensie van GBS-kolonisasie in BV-negatiewe (23.5&#x0025;) in vergelyking met BV-positiewe vroue (17&#x0025;) gerapporteer terwyl Srinivasan et al. (<xref ref-type="bibr" rid="CIT0043">2012</xref>) geen verskil gevind het nie. In ons studie was nie-Groep B <italic>Streptococcus S. anginosus</italic> ook aansienlik meer volop in BV-negatiewe vroue.</p>
<p>Ten slotte: daar is &#x2019;n ho&#x00EB; voorkoms van SOI&#x2019;s onder jong vroue tussen 16 en 22 jaar in hierdie hulpbron-arm gemeenskap in Kaapstad &#x2013; veral Chlamydia en ho&#x00EB;-risiko MPV, sowel as BV. Chlamydia-infeksie sowel as BV kan reproduktiewe gesondheid nadelig be&#x00EF;nvloed en hierdie vroue teen addisionele risiko vir MIV-verkryging plaas. Die oorvloed van <italic>P. amnii</italic> in besonder kan MIV-risiko verhoog gegewe sy inflammatoriese vermo&#x00EB;. Laboratorium-gebaseerde toetse vir SOI&#x2019;s (veral Chlamydia en Gonorrhoeae) tesame met verdere monitering en/of behandeling van BV, blyk in hierdie gemeenskap geregverdig te wees.</p>
</sec>
<sec id="s0010">
<title>Etiese oorweging</title>
<p>Goedkeuring vir die studie is vanaf die Navorsingsetiek-komitee van die Universiteit van Kaapstad verkry.</p>
</sec>
</body>
<back>
<ack>
<title>Erkenning</title>
<p>Ons bedank die WISH studiespanne, veral Pinky Ngobo, Nozipho Hadebe, Janine Nixon, en al die jong vroue wat aan die studie deelgeneem het. Ons bedank prof. Lynn Morris, David Lewis, Venessa Maseko en Raveshni Durgiah van die Nasionale Instituut vir Oordraagbare Siektes vir hulle hulp met steekproefverwerking. Berekeninge is uitgevoer met behulp van fasiliteite wat deur die Universiteit van Kaapstad se <italic>ICTS High Performance Computing</italic>-span voorsien is: <ext-link ext-link-type="uri" xlink:href="http://hpc.uct.ac.za">http://hpc.uct.ac.za</ext-link>.</p>
<p>Hierdie studie is ondersteun deur toelaes vanaf die Europese en Ontwikkelende Lande Kliniese Proewe Vennootskap (EDCTP), Strategic Primer subsidie [SP&#x00B7;2011&#x00B7;41304&#x00B7;038] en die Suid-Afrikaanse Departement van Wetenskap en Tegnologie [DST/CON 0260/2012]. Katie S. Lennard word deur die Nasionale Navorsingstigting en die Suid-Afrikaanse Akademie vir Wetenskap en Kuns ondersteun. Heather B. Jaspan is gedeeltelik deur K08HD069201 ondersteun. S.L.B. is deur die <italic>HIV Vaccine Trials Network SHAPe Program, die Fogarty Foundation</italic> en die Suid-Afrikaanse Mediese Navorsingsraad (MNR) ondersteun. S.D. is deur die Nasionale Navorsingstigting van Suid-Afrika ondersteun. Die <italic>Desmond Tutu HIV Foundation</italic> erken ook die ondersteuning van ViiV-gesondheidsorg in hul YouthShield-program. Perinatale MIV-navorsingseenheid is deur befondsing van die Suid-Afrikaanse Mediese Navorsingsraad ondersteun.</p>
<sec id="s20011" sec-type="COI-statement">
<title>Mededingende belange</title>
<p>Die skrywers verklaar dat hulle geen finansi&#x00EB;le of persoonlike verhouding(s) het wat hulle onvanpas be&#x00EF;nvloed het in die skryf van hierdie artikel nie.</p>
</sec>
<sec id="s20012">
<title>Outeursbydrae</title>
<p>H.B.J., J.A.P., K.L. het die kohort gewerf. G.G., S.L.B., L.G.B. het die eksperimente uitgedink ontwerp. S.D., S.B., E.H., S.Z.J. het die data geanaliseer. K.L., S.D., J.A.P., G.B. het die laboratorium eksperimente uitgevoer, en K.L., J.A.P., H.B.J., S.L.B., S.D., L.G.B., E.H., N.M., N.N.M., S.Z.J., G.G., G.B. het die manuskrip geskryf.</p>
</sec>
</ack>
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<fn><p><bold>How to cite this article:</bold> Lennard, K.S., Dabee, S., Barnabas, S.L., Havyarimana, E., Jaumdally, S.Z. &#x0026; Botha, G. et al., 2017, &#x2018;Ho&#x00EB; voorkomskoers van bakteri&#x00EB;le vaginose en Chlamydia in &#x2019;n lae-inkomste, ho&#x00EB;-bevolkingsdigtheid gemeenskap in Kaapstad&#x2019;, <italic>Suid-Afrikaanse Tydskrif vir Natuurwetenskap en Tegnologie</italic> 36(1), a1495. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.4102/satnt.v36i1.1495">https://doi.org/10.4102/satnt.v36i1.1495</ext-link></p></fn>
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